bioRxiv Subject Collection: Neuroscience's Journal
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Sunday, October 19th, 2025
| Time |
Event |
| 7:30a |
A genetically-defined population of amygdalofugal neurons promotes suckling and early postnatal growth
Suckling by newborns is an instinctive behavior defining the mammalian class. Yet, due to experimental difficulty in assessing neural function in the very young, little is known about the neural control of this fundamental behavior. Here we develop molecular-genetic approaches to interrogate neuronal connectivity and function in newborn mice and used these tools to identify a population of pro-dynorphin (PDYN) and somatostatin (SST) expressing neurons in the central amygdala that are activated during suckling. CeA PDYN+SST+ neurons connect with brainstem areas mediating oral sensorimotor and reward function in adults, and their ablation in newborns decreases suckling vigor and impairs growth. These results uncover the crucial role of a specific neuronal population of the central amygdala in maintaining the infants propensity to suckle and thrive throughout infancy. | | 12:30p |
Behaviorally relevant cell ensembles in rat motor cortex are replayed during sleep and implicate hippocampal involvement in motor skill learning
Motor memory is essential for our daily activities. It involves complex neural processes during learning and sleep. However, unlike explicit memory where its neural activation and role in memory consolidation are well-studied, the properties of cell ensembles for motor memory are less understood. In this study, we re-examined rats' behavior and neural activity in the primary motor cortex (M1) and hippocampus while the animals were trained daily on a single-pellet reaching task. Recordings included both the training and 3 hr rest epochs before and after training. Behaviorally, the animals were classified into two learning types: rapid and gradual learners. Unsupervised cell ensemble detection on M1 neurons revealed that about 60% of the ensembles were modulated during reaching behavior. Those reach-related ensembles were further categorized into four types, and their replay was detected during both slow-wave sleep (SWS) and REM sleep. In SWS, replay preferentially occurred during spindles, especially slow-oscillation coupled spindles (SO-spindles). In addition, about 30% of the reach-related cell ensembles were modulated during the hippocampal sharp-wave ripples (SWRs). The direction of modulation and the temporal coupling between SWRs and SO-spindles depended on the training phase and the animals' learning types. Our results demonstrate the replay of rats' skilled-reaching memory during SWS and REM sleep and the possible involvement of the hippocampus through the modulation of M1 activations during SWRs. This study will advance our understanding of how neural activity patterns evolve during skilled-reaching learning and sleep, and help develop medical applications that leverage sleep's memory functions. | | 12:30p |
Cognitive Resilience in Aging Degus is Linked to CA3 Hippocampal GABAergic Integrity
The preservation of cognitive function during aging remains a key challenge in neuroscience. In this study, we applied an integrative approach, combining behavioral assays with neurophysiological recordings, to investigate hippocampal circuit integrity. We used Octodon degus, a rodent with exceptional longevity (up to 10 years in laboratory conditions), as a natural model of aging and neurodegenerative disease such as Alzheimer. To assess age-related cognitive changes, we employed three behavioral tasks: Novel Object Recognition (NOR), Open Field (OF), and the Burrowing Test (BT). The BT reflects Activities of Daily Living (ADLs) and is based on species-typical spontaneous burrowing behavior, which has been linked to neurodegenerative markers in degus. We also performed multielectrode electrophysiological recordings to assess GABAergic function in the hippocampus. Aged degus with high BT performance (classified as good burrowers, or GB) showed robust hippocampal activity, especially in the CA3 region, a key hub for signal integration and memory encoding. In contrast, degus with poor BT performance (bad burrowers, or BB) exhibited reduced spontaneous hippocampal activity, suggesting potential compensation via GABA-independent synaptic mechanisms. Altogether, our findings suggest that preserved GABAergic function supports cognitive resilience in aging degus. These results offer new insights into the neural mechanisms underlying healthy cognitive aging and may inform future strategies for preventing or mitigating neurodegeneration. | | 12:30p |
Modeling Alzheimer's Disease with APOE4 Neuron-Glial Brain Assembloids Reveals IGFBPs as Therapeutic Targets
Alzheimer's disease (AD) research has been hindered by the lack of models that faithfully recapitulate the full profile of disease progression in a human genetic background. We developed a 3D assembloid model ("Masteroid") using iPSC-derived neurons, astrocytes, and microglia from APOE4/4 and isogenic control lines. Neurons were seeded with tau oligomers, then combined with astrocytes and microglia to form mature 3D Masteroids, followed by amyloid-{beta} oligomer exposure. After four weeks, AD-Masteroids exhibited hallmark pathologies, including extracellular amyloid-{beta} deposits, intracellular tau aggregation, neurodegeneration, astrogliosis, and microglial activation, with APOE4 exacerbating all phenotypes. Single-cell RNA sequencing further identified novel roles of IGFBP pathways in amyloid-{beta} and tau-mediated pathology. This innovative platform provides a robust system to dissect cellular and molecular mechanisms of AD progression and offers a powerful tool for therapeutic discovery. | | 12:30p |
The neural basis of emotional generalization in empathy
The essence of empathy is generalization of emotion across persons. Here, we leverage recent theoretical advances in the neuroscience of generalization to help us understand empathy. We measured brain activity in human neurosurgical patients performing two tasks, one focused on identifying their own emotional response and one identifying emotional responses in others. We quantified the representational geometry of local field potential (LFP) high-gamma activity in four regions: the medial temporal lobe, anterior cingulate cortex, orbitofrontal cortex, and insula. We found encoding of both self- and other-emotions in all four regions, but codes for emotion and person are disentangled (that is, factorized) in the insula, but not the other regions. This factorized representation allows for cross-person generalization of emotion in a way that tangled (non-factorized) representations do not. Together, these results support the hypothesis that the insula uniquely contributes to social mirroring processes by which we understand emotions across individuals. | | 12:30p |
The spatiotemporal structure of neural activity in motor cortex during reaching
Intracortical brain-computer interfaces (BCI) leverage knowledge about neural representations to translate movement-related neural activity into actions. BCI implants have targeted broad cortical regions known to have relevant motor representations, but emerging technologies will allow flexible targeting to specific neural populations. The structure of motor representations at this scale, however, has not been well characterized across frontal motor cortices. Here, we investigate how motor representations and population dynamics (temporal coordination) vary across a large expanse of frontal motor cortices. We used high-density, laminar, microelectrode arrays to simultaneously record many neurons and then sampled neural populations across frontal motor cortex in two monkeys while they performed a reaching task. Our experiments allowed us to map neuronal activity across three spatial dimensions and relate them to movement. Target decoding analysis revealed that task information was heterogeneously distributed across the cortical surface and in depth. Similarly, we found that the temporal dynamics of different neural populations were heterogeneous, but that the amount of task information predicted which neural populations had similar dynamics. The neural populations with the most similar dynamics were composed of neurons with high task information regardless of spatial location. Our results highlight the spatiotemporal complexity of motor representations across frontal motor cortex at the level of neurons and neural populations, where well-learned movements consistently recruit a spatially distributed subset of neurons. Further insights into the spatiotemporal structure of neural activity patterns across frontal motor cortex will be critical to guide future implants for improved BCI performance. | | 12:30p |
Spatially-local inhibition and synaptic plasticity together enable dynamic, context-dependent integration of parallel sensory pathways
Retinal ganglion cells have traditionally been grouped into cells that are sensitive to luminance but not spatial structure and cells with responses that are enhanced by spatial structure. Neither category captures responses of mouse Off Transient alpha cells, which are largest for spatially homogeneous inputs and are suppressed by spatial structure. We identified two circuit mechanisms that together can explain this unusual spatial selectivity. First, inhibition to these cells is tuned to finer spatial structure than excitation, causing the balance of excitation and inhibition to depend on spatial scale. Second, the excitatory synapses onto these cells undergo strong synaptic depression and the modulation of that depression by presynaptic inhibition amplifies responses to the transition from spatially structured to homogeneous inputs. A spatiotemporal computational model incorporating these circuit features quantitatively recapitulates the observed dynamics. These findings reveal how localized inhibition and short-term plasticity jointly create the distinctive spatial selectivity of Off Transient cells. | | 12:30p |
Intersection of transient cell states with stable cell types in hippocampus
The transcriptome of a brain cell encodes both its stable identity and its dynamic responses to environmental stimuli. While significant progress has been made in categorizing cell types within the brain, deciphering to what extent transcriptional identity and transcriptional state are related remains a major technical and conceptual challenge. Here, we present a single-nucleus RNA-sequencing atlas of the mouse hippocampus spanning physiological and pathological stimuli and multiple circadian phases, enabling unified analysis of activity-, circadian-, and cell-type-dependent transcriptional programs. Taxonomically assigned cell types are largely stable despite the induction of different activity states, with a notable exception in the dentate gyrus. Activity and circadian rhythm each drive robust, largely nonoverlapping transcriptional responses, with convergent regulation on genes involved in specific pathways, including endocannabinoid signaling, excitability, and chromatin remodeling. These results underscore the necessity of integrating cell-type taxonomy with transcriptional state to capture how diverse cell types respond to experience. | | 1:49p |
Microglia maintain retinal redox homeostasis following ablation of rod photoreceptors in zebrafish
Microglia rapidly respond to injury, stress, and perturbations to neurons in the brain and retina and perform phagocytosis to clear dying cells and debris. Oxidative stress is a frequent feature of neurodegeneration, and while glia are crucial for managing such stress, microglia may also be dysfunctional in diseased tissue. Here we examine the role of microglia in management of oxidative stress upon death of rod photoreceptors in the larval zebrafish retina. Using rho:nfsb-eGFP transgenic zebrafish and treatment with the pro-drug metronidazole (MTZ), we coupled the generation of reactive oxygen species (ROS) in dying rods to their ablation. Microglia efficiently engulfed and cleared the ROS-laden rods, effectively undertaking the oxidative load. Despite abundant ROS upon MTZ-mediated cell death, oxidative stress overall was minimal in retinal tissue when microglia were present, indicating that they rapidly and efficiently performed redox functions. In irf8-/- mutants, which are deficient in microglia, retinas with MTZ-induced rod ablation showed widespread ROS that localized, at least in part, to Muller glia. Further, there was evidence of increased oxidative stress, and increased numbers of off-target inner retinal neurons that stained positive for the cell death marker TUNEL. Supplementation with the antioxidant Glutathione (GSH) reduced the number of off-target TUNEL+ cells detected in microglia-deficient retinas following rod ablation. Our results indicate that microglial redox functions are important in restoring homeostasis following acute retinal damage. | | 1:49p |
Synapse Detection Efficiency in EM Drosophila Connectomics
Researchers have long noted the differences in synapse count between different EM reconstructions of similar circuitry. In this paper we attempt to determine the portion of these differences that may be due to different sample preparation and imaging techniques, in particular serial-section transmission imaging (SS-TEM) compared to focused ion beam with scanning electron microscopy (FIB-SEM). To do this, we compare synapse detection in the major Drosophila EM reconstructions - FANC, MANC, FAFB (with original and new synapses), male CNS, BANC, and HemiBrain, plus several smaller reconstructions. We look at raw synapse counts to avoid any dependence on proofreading, and compensate insofar as possible for the confounds of sample sizes differences and different software detection efficiency. The result are estimates, per compartment and for the sample as a whole, of the number of synapses that would be visible to a skilled human observer. These are then compared across all samples, using regions which are reconstructed in common for each sample pair. We find that in almost all known cases where a volume has been reconstructed by both techniques, isotropic FIB-SEM reconstructions show more human-visible synapses than microtome sliced reconstructions, typically by more than 40%. This strongly suggests, but does not conclusively prove, that synapses are easier to see in isotropic FIB-SEM data. |
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