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Hello, scientific community,
I am writing on behalf of O.V. Savytskyi, Junior Research Scientist of Institute of Molecular Biology and Genetics, National Academy of Sciences of Ukraine (NASU).
(id from NASU and x.509 certificates will be provided to you).
At this moment we are out of local CPU resources (too many projects running on different local clusters). We need around 432000 CPU hours (around 100 cores for half year) on a single-architecture cluster capable to run >32 cores per task:
http://www.cineca.it/
http://www.prace-project.eu/
http://www.hpc-europa.eu/?q=node/74
It would be great to have access\account on one of such clusters (or other), to run MD calculations on GROMACS 4.5.* (ff amber) to make research on the Molecular Dynamics of human tyrosyl-tRNA synthetase and their mutant forms: G41R, E196K, K265N, 153-156delVKQV, associated with neurodegenerative diseases like Charcot-Marie-Tooth neuropathy.
Web: http://imbg.org.ua/en/
We will link to you and note your help in the paper publication.
Some of our previous publications:
S.O. Yesylevskyy, O.V. Savytskyi, K.A. Odynets and A.I.Kornelyuk. Interdomain Compactization in Human Tyrosyl-tRNA Synthetase Studied by the Hierarchical Rotations Technique.
Biophysical Chemistry, Vol. 154, Issues 2-3, pp. 90-98, March 2011.
O.V. Savytskyi, I.A. Sliusar, S.O. Yesylevskyy, S.G. Stirenko, A.I. Kornelyuk. Integrated Tools for Molecular Dynamics Simulation Data Analysis in the Moldyngrid Virtual Laboratory.
Proceedings of the 6-th IEEE International Conference IDAACS 2011, 15-17 September 2011, Prague, Czech Republic, pp. 209-211.
А. Salnikov, I. Sliusar, O. Sudakov, O. Savytskyi, A. Kornelyuk. Virtual Laboratory MolDynGrid as a Part of Scientific Infrastructure for Biomolecular Simulations.
International Journal of Computing, Vol. 9, Issue 4, 2010, рр. 294-300.
Web: https://moldyngrid.org/main.php
Thank you!
Please leave your contacts in this topic or via distributed.ua@gmail.com
Your help will be greatly appreciated!
ps: if you can, please forward this proposal to appropriate scientist!
I am writing on behalf of O.V. Savytskyi, Junior Research Scientist of Institute of Molecular Biology and Genetics, National Academy of Sciences of Ukraine (NASU).
(id from NASU and x.509 certificates will be provided to you).
At this moment we are out of local CPU resources (too many projects running on different local clusters). We need around 432000 CPU hours (around 100 cores for half year) on a single-architecture cluster capable to run >32 cores per task:
http://www.cineca.it/
http://www.prace-project.eu/
http://www.hpc-europa.eu/?q=node/74
It would be great to have access\account on one of such clusters (or other), to run MD calculations on GROMACS 4.5.* (ff amber) to make research on the Molecular Dynamics of human tyrosyl-tRNA synthetase and their mutant forms: G41R, E196K, K265N, 153-156delVKQV, associated with neurodegenerative diseases like Charcot-Marie-Tooth neuropathy.
Web: http://imbg.org.ua/en/
We will link to you and note your help in the paper publication.
Some of our previous publications:
S.O. Yesylevskyy, O.V. Savytskyi, K.A. Odynets and A.I.Kornelyuk. Interdomain Compactization in Human Tyrosyl-tRNA Synthetase Studied by the Hierarchical Rotations Technique.
Biophysical Chemistry, Vol. 154, Issues 2-3, pp. 90-98, March 2011.
O.V. Savytskyi, I.A. Sliusar, S.O. Yesylevskyy, S.G. Stirenko, A.I. Kornelyuk. Integrated Tools for Molecular Dynamics Simulation Data Analysis in the Moldyngrid Virtual Laboratory.
Proceedings of the 6-th IEEE International Conference IDAACS 2011, 15-17 September 2011, Prague, Czech Republic, pp. 209-211.
А. Salnikov, I. Sliusar, O. Sudakov, O. Savytskyi, A. Kornelyuk. Virtual Laboratory MolDynGrid as a Part of Scientific Infrastructure for Biomolecular Simulations.
International Journal of Computing, Vol. 9, Issue 4, 2010, рр. 294-300.
Web: https://moldyngrid.org/main.php
Thank you!
Please leave your contacts in this topic or via distributed.ua@gmail.com
Your help will be greatly appreciated!
ps: if you can, please forward this proposal to appropriate scientist!
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